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| Registros recuperados: 16 | |
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| Carradec, Quentin; Pelletier, Eric; Da Silva, Corinne; Alberti, Adriana; Seeleuthner, Yoann; Blanc-mathieu, Romain; Lima-mendez, Gipsi; Rocha, Fabio; Tirichine, Leila; Labadie, Karine; Kirilovsky, Amos; Bertrand, Alexis; Engelen, Stefan; Madoui, Mohammed-amin; Meheust, Raphael; Poulain, Julie; Romac, Sarah; Richter, Daniel J.; Yoshikawa, Genki; Dimier, Celine; Kandels-lewis, Stefanie; Picheral, Marc; Searson, Sarah; Jaillon, Olivier; Aury, Jean-marc; Karsenti, Eric; Sullivan, Matthew B.; Sunagawa, Shinichi; Bork, Peer; Not, Fabrice; Hingamp, Pascal; Raes, Jeroen; Guidi, Lionel; Ogata, Hiroyuki; De Vargas, Colomban; Iudicone, Daniele; Bowler, Chris; Wincker, Patrick; Tara Oceans Coordinators,. |
| While our knowledge about the roles of microbes and viruses in the ocean has increased tremendously due to recent advances in genomics and metagenomics, research on marine microbial eukaryotes and zooplankton has benefited much less from these new technologies because of their larger genomes, their enormous diversity, and largely unexplored physiologies. Here, we use a metatranscriptomics approach to capture expressed genes in open ocean Tara Oceans stations across four organismal size fractions. The individual sequence reads cluster into 116 million unigenes representing the largest reference collection of eukaryotic transcripts from any single biome. The catalog is used to unveil functions expressed by eukaryotic marine plankton, and to assess their... |
| Tipo: Text |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00660/77232/79053.pdf |
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| Caputi, Luigi; Carradec, Quentin; Eveillard, Damien; Kirilovsky, Amos; Pelletier, Eric; Karlusich, Juan J. Pierella; Vieira, Fabio Rocha Jimenez; Villar, Emilie; Chaffron, Samuel; Malviya, Shruti; Scalco, Eleonora; Acinas, Silvia G.; Alberti, Adriana; Aury, Jean-marc; Benoiston, Anne-sophie; Bertrand, Arnaud; Biard, Tristan; Bittner, Lucie; Boccara, Martine; Brum, Jennifer R.; Brunet, Cedric; Busseni, Greta; Carratala, Anna; Claustre, Herve; Coelho, Luis Pedro; Colin, Sbastien; D'Aniello, Salvatore; Da Silva, Corinne; Del Core, Marianna; Dore, Hugo; Gasparini, Stephane; Kokoszka, Florian; Jamet, Jean-louis; Lejeusne, Christophe; Lepoivre, Cyrille; Lescot, Magali; Lima-mendez, Gipsi; Lombard, Fabien; Lukes, Julius; Maillet, Nicolas; Madoui, Mohammed-amin; Martinez, Elodie; Mazzocchi, Maria Grazia; Neou, Mario B.; Paz-yepes, Javier; Poulain, Julie; Ramondenc, Simon; Romagnan, Jean-baptiste; Roux, Simon; Manta, Daniela Salvagio; Sanges, Remo; Speich, Sabrina; Sprovieri, Mario; Sunagawa, Shinichi; Taillandier, Vincent; Tanaka, Atsuko; Tirichine, Leila; Trottier, Camille; Uitz, Julia; Veluchamy, Alaguraj; Vesela, Jana; Vincent, Flora; Yau, Sheree; Kandels-lewis, Stefanie; Searson, Sarah; Dimier, Cline; Picheral, Marc; Bork, Peer; Boss, Emmanuel; De Vargas, Colomban; Follows, Michael J.; Grimsley, Nigel; Guidi, Lionel; Hingamp, Pascal; Karsenti, Eric; Sordino, Paolo; Stemmann, Lars; Sullivan, Matthew B.; Tagliabue, Alessandro; Zingone, Adriana; Garczarek, Laurence; D'Ortenzio, Fabrizio; Testor, Pierre; Not, Fabrice; D'Alcala, Maurizio Ribera; Wincker, Patrick; Bowler, Chris; Iudicone, Daniele; Gorsky, Gabriel; Jaillon, Olivier; Karp-boss, Lee; Krzic, Uros; Ogata, Hiroyuki; Pesant, Stephane; Raes, Jeroen; Reynaud, Emmanuel G.; Sardet, Christian; Sieracki, Mike; Velayoudon, Didier; Weissenbach, Jean. |
| Predicting responses of plankton to variations in essential nutrients is hampered by limited in situ measurements, a poor understanding of community composition, and the lack of reference gene catalogs for key taxa. Iron is a key driver of plankton dynamics and, therefore, of global biogeochemical cycles and climate. To assess the impact of iron availability on plankton communities we explored the comprehensive bio‐oceanographic and ‐omics datasets from Tara Oceans in the context of the iron products from two state‐of‐the‐art global scale biogeochemical models. We obtained novel information about adaptation and acclimation towards iron in a range of phytoplankton, including picocyanobacteria and diatoms, and identified whole sub‐communities co‐varying with... |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00475/58680/61184.pdf |
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| Dupouy, Cecile; Frouin, Robert; Tedetti, Marc; Maillard, Morgane; Rodier, Martine; Lombard, Fabien; Guidi, Lionel; Picheral, Marc; Neveux, Jacques; Duhamel, Solange; Charriere, Bruno; Sempere, Richard. |
| We assessed the influence of the marine diazotrophic cyanobacterium Trichodesmium on the bio-optical properties of western tropical South Pacific (WTSP) waters (18-22 degrees S, 160 degrees E-160 degrees W) during the February-March 2015 OUTPACE cruise. We performed measurements of backscattering and absorption coefficients, irradiance, and radiance in the euphotic zone with a Satlantic MicroPro free-fall profiler and took Underwater Vision Profiler 5 (UPV5) pictures for counting the largest Trichodesmium spp. colonies. Pigment concentrations were determined by fluorimetry and high-performance liquid chromatography and picoplankton abundance by flow cytometry. Trichome concentration was estimated from pigment algorithms and validated by surface visual... |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00457/56824/58659.pdf |
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| De Vargas, Colomban; Audic, Stephane; Henry, Nicolas; Decelle, Johan; Mahe, Frederic; Logares, Ramiro; Lara, Enrique; Berney, Cedric; Le Bescot, Noan; Probert, Ian; Carmichael, Margaux; Poulain, Julie; Romac, Sarah; Colin, Sebastien; Aury, Jean-marc; Bittner, Lucie; Chaffron, Samuel; Dunthorn, Micah; Engelen, Stefan; Flegontova, Olga; Guidi, Lionel; Horak, Ales; Jaillon, Olivier; Lima-mendez, Gipsi; Lukes, Julius; Malviya, Shruti; Morard, Raphael; Mulot, Matthieu; Scalco, Eleonora; Siano, Raffaele; Vincent, Flora; Zingone, Adriana; Dimier, Celine; Picheral, Marc; Searson, Sarah; Kandels-lewis, Stefanie; Acinas, Silvia G.; Bork, Peer; Bowler, Chris; Gorsky, Gabriel; Grimsley, Nigel; Hingamp, Pascal; Iudicone, Daniele; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Raes, Jeroen; Sieracki, Michael E.; Speich, Sabrina; Stemmann, Lars; Sunagawa, Shinichi; Weissenbach, Jean; Wincker, Patrick; Karsenti, Eric. |
| Marine plankton support global biological and geochemical processes. Surveys of their biodiversity have hitherto been geographically restricted and have not accounted for the full range of plankton size. We assessed eukaryotic diversity from 334 size-fractionated photic-zone plankton communities collected across tropical and temperate oceans during the circumglobal Tara Oceans expedition. We analyzed 18S ribosomal DNA sequences across the intermediate plankton-size spectrum from the smallest unicellular eukaryotes (protists, > 0.8 micrometers) to small animals of a few millimeters. Eukaryotic ribosomal diversity saturated at similar to 150,000 operational taxonomic units, about one-third of which could not be assigned to known eukaryotic groups.... |
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| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00270/38135/37217.pdf |
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| Gorsky, Gabriel; Bourdin, Guillaume; Lombard, Fabien; Pedrotti, Maria Luiza; Audrain, Samuel; Bin, Nicolas; Boss, Emmanuel; Bowler, Chris; Cassar, Nicolas; Caudan, Loic; Chabot, Genevieve; Cohen, Natalie R.; Cron, Daniel; De Vargas, Colomban; Dolan, John R.; Douville, Eric; Elineau, Amanda; Flores, J. Michel; Ghiglione, Jean Francois; Haentjens, Nils; Hertau, Martin; John, Seth G.; Kelly, Rachel L.; Koren, Ilan; Lin, Yajuan; Marie, Dominique; Moulin, Clementine; Moucherie, Yohann; Pesant, Stephane; Picheral, Marc; Poulain, Julie; Pujo-pay, Mireille; Reverdin, Gilles; Romac, Sarah; Sullivan, Mathew B.; Trainic, Miri; Tressol, Marc; Trouble, Romain; Vardi, Assaf; Voolstra, Christian R.; Wincker, Patrick; Agostini, Sylvain; Banaigs, Bernard; Boissin, Emilie; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Gilson, Eric; Reynaud, Stephanie; Sunagawa, Shinichi; Thomas, Olivier P.; Thurber, Rebecca Lisette Vega; Zoccola, Didier; Planes, Serge; Allemand, Denis; Karsenti, Eric; Planes, S.; Banaig, B.; Boissin, E.; Iwankow, G.; Allemand, D.; Zoccola, D.; Reynaud, S.; Beraud, E.; Djerbi, N.; Forcioli, D.; Furla, P.; Gilson, E.; Mcmind, R.; Ottaviani, A.; Rottinger, E.; Rouan, A.; Zamoum, T.; Flume, B. C. C.; Pogoreutz, C.; Voolstra, C. R.; Rothig, T.; Ziegler, M.; Paoli, L.; Ruscheweyh, H-j; Salazar, G.; Sunagawa, S.; Flores, J. M.; Koren, I; Trainic, M.; Lang-yona, N.; Vardi, A.; Conan, P.; Ghiglione, J-f; Pujo-pay, M.; Galand, P. E.; Hochart, C.; Audrain, S.; Bourgois, E.; Hertau, M.; Lancelot, J.; Monmarche, D.; Moulin, C.; Moucherie, Y.; Trouble, R.; Boss, E.; Bourdin, G.; Haentjens, N.; Karp-boss, L.; Douville, Eric; Agostini, S.; Mitsuhashi, G.; Kitano, Y.; Da Silva, O.; Dolan, J. R.; Gorsky, G.; Lemee, R.; Lombard, F.; Pedrotti, M-l; Cronin, D.; Sullivan, M.; Armstrong, E.; Aury, J-m; Barbe, V; Belser, C.; Carradec, Q.; Labadie, K.; Le-hoang, J.; Noel, B.; Poulain, J.; Wincker, P.; Klinges, G.; Vega-thunder, R.; Bonnival, E.; De Vargas, C.; Henry, N.; Marie, D.; Romac, S.; Pesant, S.; Miguel-gorda, M.; Thomas, O. P.; Bowler, C.; Friedrich, R.; Cassar, N.; Lin, Y.; John, S. G.; Kelly, R. L.; Cohen, N. R.; Reverdin, G.; Filee, J.. |
| Interactions between the ocean and the atmosphere occur at the air-sea interface through the transfer of momentum, heat, gases and particulate matter, and through the impact of the upper-ocean biology on the composition and radiative properties of this boundary layer. The Tara Pacific expedition, launched in May 2016 aboard the schooner Tara, was a 29-month exploration with the dual goals to study the ecology of reef ecosystems along ecological gradients in the Pacific Ocean and to assess inter-island and open ocean surface plankton and neuston community structures. In addition, key atmospheric properties were measured to study links between the two boundary layer properties. A major challenge for the open ocean sampling was the lack of ship-time available... |
| Tipo: Text |
Palavras-chave: Neuston/plankton genomics/taxonomy/imaging; Aerosols; NCP; IOP; Trace metals; Microplastic. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00599/71083/69390.pdf |
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| Salazar, Guillem; Paoli, Lucas; Alberti, Adriana; Huerta-cepas, Jaime; Cuenca, Miguelangel; Field, Christopher M.; Coelho, Luis Pedro; Cruaud, Corinne; Engelen, Stefan; Gregory, Ann C.; Labadie, Karine; Marec, Claudie; Pelletier, Eric; Royo-llonch, Marta; Roux, Simon; Sánchez, Pablo; Uehara, Hideya; Zayed, Ahmed A.; Zeller, Georg; Carmichael, Margaux; Dimier, Céline; Ferland, Joannie; Kandels, Stefanie; Picheral, Marc; Pisarev, Sergey; Poulain, Julie; Acinas, Silvia G.; Babin, Marcel; Bork, Peer; Bowler, Chris; De Vargas, Colomban; Guidi, Lionel; Hingamp, Pascal; Iudicone, Daniele; Karp-boss, Lee; Karsenti, Eric; Ogata, Hiroyuki; Pesant, Stephane; Speich, Sabrina; Sullivan, Matthew B.; Wincker, Patrick; Sunagawa, Shinichi. |
| Ocean microbial communities strongly influence the biogeochemistry, food webs, and climate of our planet. Despite recent advances in understanding their taxonomic and genomic compositions, little is known about how their transcriptomes vary globally. Here, we present a dataset of 187 metatranscriptomes and 370 metagenomes from 126 globally distributed sampling stations and establish a resource of 47 million genes to study community-level transcriptomes across depth layers from pole-to-pole. We examine gene expression changes and community turnover as the underlying mechanisms shaping community transcriptomes along these axes of environmental variation and show how their individual contributions differ for multiple biogeochemically relevant processes.... |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00591/70339/68396.pdf |
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| Ibarbalz, Federico M.; Henry, Nicolas; Costa Brandao, Manoela; Martini, Verine; Busseni, Greta; Byrne, Hannah; Coelho, Luis Pedro; Endo, Hisashi; Gasol, Josep M.; Gregory, Ann C.; Mahe, Frederic; Rigonato, Janaina; Royo-llonch, Marta; Salazar, Guillem; Sanz-saez, Isabel; Scalco, Eleonora; Soviadan, Dodji; Zayed, Ahmed A.; Zingone, Adriana; Labadie, Karine; Ferland, Joannie; Marec, Claudie; Kandels, Stefanie; Picheral, Marc; Dimier, Celine; Poulain, Julie; Pisarev, Sergey; Carmichael, Margaux; Pesant, Stephane; Acinas, Silvia G.; Babin, Marcel; Bork, Peer; Boss, Emmanuel; Bowler, Chris; Cochrane, Guy; De Vargas, Colomban; Follows, Mick; Gorsky, Gabriel; Grimsley, Nigel; Guidi, Lionel; Hingamp, Pascal; Iudicone, Daniele; Jaillon, Olivier; Kandels, Stefanie; Karp-boss, Lee; Karsenti, Eric; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Poulton, Nicole; Raes, Jeroen; Sardet, Christian; Speich, Sabrina; Stemmann, Lars; Sullivan, Matthew B.; Sunagawa, Shinichi; Wincker, Patrick; Bopp, Laurent; Lombard, Fabien; Zinger, Lucie. |
| The ocean is home to myriad small planktonic organisms that underpin the functioning of marine ecosystems. However, their spatial patterns of diversity and the underlying drivers remain poorly known, precluding projections of their responses to global changes. Here we investigate the latitudinal gradients and global predictors of plankton diversity across archaea, bacteria, eukaryotes, and major virus Glades using both molecular and imaging data from Tara Oceans. We show a decline of diversity for most planktonic groups toward the poles, mainly driven by decreasing ocean temperatures. Projections into the future suggest that severe warming of the surface ocean by the end of the 21st century could lead to tropicalization of the diversity of most planktonic... |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00597/70911/69146.pdf |
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| Lomnard, Fabien; Boss, Emmanuel; Waite, Anya M.; Vogt, Meike; Uitz, Julia; Stemman, Lars; Sosik, Heidi M.; Schulz, Jan; Romagnan, Jean-baptiste; Picheral, Marc; Pearlman, Jay; Ohman, Mark D; Niehoff, Barbara; Möller, Klas O; Miloslavich, Patricia; Lara-lpez, Ana; Kudela, Raphael; Lopes, Ribens M; Kiko, Rainer; Karp-boss, Lee; Jaffe, Jules S; Iversen, Morten H; Irisson, Jean-olivier; Fennel, Katja; Hauss, Helena; Guidi, Lionel; Gorsky, Gaby; Giering, Sarah L.c.; Gaube, Peter; Gallager, Scott; Dubelaar, George; Cowen, Robert K; Carlotti, François; Briseno-avena, Christian; Berline, Léo; Benoit-bird, Kelly; Bax, Nicholas; Batten, Sonia; Ayata, Sakina Dorothée; Artigas, Luis Felipe; Appeltans, Ward. |
| In this paper we review the technologies available to make globally quantitative observations of particles in general—and plankton in particular—in the world oceans, and for sizes varying from sub-microns to centimeters. Some of these technologies have been available for years while others have only recently emerged. Use of these technologies is critical to improve understanding of the processes that control abundances, distributions and composition of plankton, provide data necessary to constrain and improve ecosystem and biogeochemical models, and forecast changes in marine ecosystems in light of climate change. In this paper we begin by providing the motivation for plankton observations, quantification and diversity qualification on a global scale. We... |
| Tipo: Text |
Palavras-chave: Plankton; Imaging; OceanObs; Autonomous platforms; Global observing; EOVs; ECVs. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00490/60217/63585.pdf |
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| Massicotte, Philippe; Amiraux, Rémi; Amyot, Marie-pier; Archambault, Philippe; Ardyna, Mathieu; Arnaud, Laurent; Artigue, Lise; Aubry, Cyril; Ayotte, Pierre; Bécu, Guislain; Bélanger, Simon; Benner, Ronald; Bittig, Henry C; Bricaud, Annick; Brossier, Eric; Bruyant, Flavienne; Chauvaud, Laurent; Christiansen-stowe, Debra; Claustre, Hervé; Cornet-barthaux, Véronique; Coupel, Pierre; Cox, Christine; Delaforge, Aurélie; Dezutter, Thibault; Dimier, Céline; Dominé, Florent; Dufour, Francis; Dufresne, Christiane; Dumont, Dany; Ehn, Jens; Else, Brent; Ferland, Joannie; Forget, Marie-hélène; Fortier, Louis; Gali, Marti; Galindo, Virginie; Gallinari, Morgane; Garcia, Nicole; Gerikas-ribeiro, Catherine; Gourdal, Margaux; Gourvil, Priscilla; Goyens, Clemence; Grondin, Pierre-luc; Guillot, Pascal; Guilmette, Caroline; Houssais, Marie-noëlle; Joux, Fabien; Lacour, Léo; Lacour, Thomas; Lafond, Augustin; Lagunas, José; Lalande, Catherine; Laliberté, Julien; Lambert-girard, Simon; Larivière, Jade; Lavaud, Johann; Lebaron, Anita; Leblanc, Karine; Le Gall, Florence; Legras, Justine; Lemire, Mélanie; Levasseur, Maurice; Leymarie, Edouard; Leynaert, Aude; Lopes Dos Santos, Adriana; Lourenço, Antonio; Mah, David; Marec, Claudie; Marie, Dominique; Martin, Nicolas; Marty, Constance; Marty, Sabine; Massé, Guillaume; Matsuoka, Atsushi; Matthes, Lisa; Moriceau, Brivaela; Muller, Pierre-emmanuel; Mundy, Christopher-john; Neukermans, Griet; Oziel, Laurent; Panagiotopoulos, Christos; Pangazi, Jean-jacques; Picard, Ghislain; Picheral, Marc; Pinczon Du Sel, France; Pogorzelec, Nicole; Probert, Ian; Queguiner, Bernard; Raimbault, Patrick; Ras, Joséphine; Rehm, Eric; Reimer, Erin; Rontani, Jean-françois; Rysgaard, Soren; Saint-béat, Blanche; Sampei, Makoto; Sansoulet, Julie; Schmidt, Sabine; Sempere, Richard; Sevigny, Caroline; Shen, Yuan; Tragin, Margot; Tremblay, Jean-eric; Vaulot, Daniel; Verin, Gauthier; Vivier, Frédéric; Vladoiu, Anda; Whitehead, Jeremy; Babin, Marcel. |
| The Green Edge initiative was developed to investigate the processes controlling the primary productivity and the fate of organic matter produced during the Arctic phytoplankton spring bloom (PSB) and to determine its role in the ecosystem. Two field campaigns were conducted in 2015 and 2016 at an ice camp located on landfast sea ice southeast of Qikiqtarjuaq Island in Baffin Bay (67.4797N, 63.7895W). During both expeditions, a large suite of physical, chemical and biological variables was measured beneath a consolidated sea ice cover from the surface to the bottom at 360 m depth to better understand the factors driving the PSB. Key variables such as temperature, salinity, radiance, irradiance, nutrient concentrations, chlorophyll-a concentration,... |
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| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00598/71000/69266.pdf |
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| Bouruet-aubertot, Pascale; Cuypers, Yannis; Doglioli, Andrea; Caffin, Mathieu; Yohia, Christophe; De Verneil, Alain; Petrenko, Anne; Lefèvre, Dominique; Le Goff, Hervé; Rougier, Gilles; Picheral, Marc; Moutin, Thierry. |
| Microstructure measurements were performed along the OUTPACE longitudinal transect in the tropical Pacific (Moutin and Bonnet, 2015). Small-scale dynamics and three-dimensional turbulence in the first 800m surface layer were characterized based on hydrographic and current measurements at fine scale and turbulence measurements at cm scale using a vertical microstructure profiler. The possible impact of turbulence on biogeochemical budgets in the surface layer was also addressed in this region of increasing oligotrophy to the East. The dissipation rate of turbulent kinetic energy, ε, showed an interesting contrast along the longitudinal transect with higher turbulence level in the West, i.e. the Melanesian Archipelago, compared to the East, within the South... |
| Tipo: Text |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00448/56009/57518.pdf |
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| Pesant, Stephane; Not, Fabrice; Picheral, Marc; Kandels-lewis, Stefanie; Le Bescot, Noan; Gorsky, Gabriel; Iudicone, Daniele; Karsenti, Eric; Speich, Sabrina; Trouble, Romain; Dimier, Celine; Searson, Sarah. |
| The Tara Oceans expedition (2009-2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the... |
| Tipo: Text |
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| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00600/71209/69583.pdf |
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| Jouandet, Marie-paule; Trull, Thomas W.; Guidi, Lionel; Picheral, Marc; Ebersbach, Friederike; Stemmann, Lars; Blain, Stephane. |
| We recorded vertical profiles of size distributions of particles (ranging from 0.052 to several mm in equivalent spherical diameter) in the natural iron-fertilized bloom southeast of Kerguelen Island (Southern Ocean) and in surrounding high-nutrient, low-chlorophyll (HNLC) waters with an Under Water Video Profiler during the Kerguelen Ocean and Plateau Compared Study cruise (Jan-Feb 2005). Total particle numerical abundance and total particle volume (TPV) in the 0-200-m layer were respectively 3-fold and 20-fold higher in the bloom, and integrated TPV was correlated to integrated chlorophyll concentration. The difference persisted well into the ocean interior with a 10-fold higher TPV at 400-m depth beneath the natural iron-fertilized bloom. Below 400 m,... |
| Tipo: Text |
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| Ano: 2011 |
URL: https://archimer.ifremer.fr/doc/00214/32507/30994.pdf |
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| Seeleuthner, Yoann; Mondy, Samuel; Lombard, Vincent; Carradec, Quentin; Pelletier, Eric; Wessner, Marc; Leconte, Jade; Mangot, Jean-francois; Poulain, Julie; Labadie, Karine; Logares, Ramiro; Sunagawa, Shinichi; De Berardinis, Veronique; Salanoubat, Marcel; Dimier, Celine; Kandels-lewis, Stefanie; Picheral, Marc; Searson, Sarah; Pesant, Stephane; Poulton, Nicole; Stepanauskas, Ramunas; Bork, Peer; Bowler, Chris; Hingamp, Pascal; Sullivan, Matthew B.; Iudicone, Daniele; Massana, Ramon; Aury, Jean-marc; Henrissat, Bernard; Karsenti, Eric; Jaillon, Olivier; Sieracki, Mike; De Vargas, Colomban; Wincker, Patrick; Tara Oceans Coordinators,. |
| Single-celled eukaryotes (protists) are critical players in global biogeochemical cycling of nutrients and energy in the oceans. While their roles as primary producers and grazers are well appreciated, other aspects of their life histories remain obscure due to challenges in culturing and sequencing their natural diversity. Here, we exploit single-cell genomics and metagenomics data from the circumglobal Tara Oceans expedition to analyze the genome content and apparent oceanic distribution of seven prevalent lineages of uncultured heterotrophic stramenopiles. Based on the available data, each sequenced genome or genotype appears to have a specific oceanic distribution, principally correlated with water temperature and depth. The genome content provides... |
| Tipo: Text |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00660/77234/79044.pdf |
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| Benedetti, Fabio; Jalabert, Laëtitia; Sourisseau, Marc; Becker, Beatriz; Cailliau, Caroline; Desnos, Corinne; Elineau, Amanda; Irisson, Jean-olivier; Lombard, Fabien; Picheral, Marc; Stemmann, Lars; Pouline, Patrick. |
| Marine Protected Areas have become a major tool for the conservation of marine biodiversity and resources. Yet our understanding of their efficacy is often limited because it is measured for a few biological components, typically top predators or species of commercial interest. To achieve conservation targets, marine protected areas can benefit from ecosystem-based approaches. Within such an approach, documenting the variation of plankton indicators and their covariation with climate is crucial as plankton represent the base of the food webs. With this perspective, we sought to document the variations in the emerging properties of the plankton to better understand the dynamics of the pelagic fishes, mammals and seabirds that inhabit the region. For the... |
| Tipo: Text |
Palavras-chave: Iroise Sea; Plankton; MPA; Temporal variability; Community composition; Size structure. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00490/60213/63561.pdf |
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| Picheral, Marc; Guidi, Lionel; Stemmann, Lars; Karl, David M.; Iddaoud, Ghizlaine; Gorsky, Gabriel. |
| The Underwater Vision Profiler (UVP) was developed to quantify the vertical distribution of macroscopic particles and zooplankton > 100 mu m in size. The smaller size limit is fixed by optical resolution, whereas the larger size limit is determined by the volume of water illuminated per image. The new fifth generation instrument (UVP5) is compact (30 kg in air) and operates either as a stand-alone instrument with an independent power supply for use on a mooring or free-drifting array, or as a component of a Conductivity, Temperature, and Depth (CTD)-rosette package. Images are recorded at a frequency up to 6 Hz. If the UVP5 is interfaced with a CTD, these images are acquired and analyzed in real time. Images are recorded every 20 cm at the 1 m s(-1)... |
| Tipo: Text |
Palavras-chave: Video plankton recorder; Marine snow; MU-M; Vertical distribution; Aggregate dynamics; In situ; System; Ocean; Flux; Phytoplankton. |
| Ano: 2010 |
URL: http://archimer.ifremer.fr/doc/00133/24413/22426.pdf |
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| Registros recuperados: 16 | |
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